Jordan, who is on loan at Crystal Palace from Swansea City, opened the scoring for his country in the fourth minute of the match.
He added a second from the penalty spot midway through the first half.
The result puts Ghana second in Group F on six points from three matches. They are a point behind leaders Kenya who have played one game more.
Kenya's home match against Sierra Leone this weekend was cancelled because Sierra Leone are still serving a global ban from football.
It means the qualifying picture for Group F remains unclear.